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Publications citing j5
167. Shuwen Liu, Haihan Xiao, Fangfang Zhang, Zheng Lu, Yun Zhang, Aihua Deng, Zhongcai Li, Cui Yang & Tingyi Wen. (2019) "A seamless and iterative DNA assembly method named PS-Brick and its assisted metabolic engineering for threonine and 1-propanol production". Biotechnology for Biofuelsvolume 12, Article number: 180 https://biotechnologyforbiofuels.biomedcentral.com/articles/10.1186/s13068-019-1520-x

166. Wen Wang, Ping He, Dongdong Zhao, Lijun Ye, Longhai Dai, Xueli Zhang, Yuanxia Sun, Jing Zheng, and Changhao Bi. (2019) "Construction of Escherichia coli cell factories for crocin biosynthesis" Microbial Cell Factories 18:120 https://doi.org/10.1186/s12934-019-1166-1

165. Fu Chen Le Yuan Shaozhen Ding Yu Tian Qian-Nan Hu. (2019) "Data-driven rational biosynthesis design: from molecules to cell factories". Briefings in Bioinformatics, bbz065, https://doi.org/10.1093/bib/bbz065

164. Jesus F. Barajas, Ryan P. McAndrew, Mitchell G. Thompson, Tyler W. H. Backman, Bo Pang, Tristan de Rond, Jose H. Pereira, Veronica T. Benites, Héctor García Martín, Edward E. K. Baidoo, Nathan J. Hillson, Paul D. Adams, and Jay D. Keasling. (2019) "Structural insights into dehydratase substrate selection for the borrelidin and fluvirucin polyketide synthases" J Ind Microbiol Biotechnol https://doi.org/10.1007/s10295-019-02189-z

163. Xu P., Koffas M.A.G. (2013) Assembly of Multi-gene Pathways and Combinatorial Pathway Libraries Through ePathBrick Vectors. In: Polizzi K., Kontoravdi C. (eds) Synthetic Biology. Methods in Molecular Biology (Methods and Protocols), vol 1073. Humana Press, Totowa, NJ https://doi.org/10.1007/978-1-62703-625-2_10

162. Mitchell G. Thompson, Jacquelyn M. Blake-Hedges, Pablo Cruz-Morales, Jesus F. Barajas, Samuel C. Curran, Christopher B. Eiben, Nicholas C. Harris, Veronica T. Benites, Jennifer W. Gin, William A. Sharpless, Frederick F. Twigg, Will Skyrud, Rohith N. Krishna, Jose Henrique Pereira, Edward E. K. Baidoo, Christopher J. Petzold, Paul D. Adams, Adam P. Arkin, Adam M. Deutschbauer, Jay D. Keasling. (2019) "Massively Parallel Fitness Profiling Reveals Multiple Novel Enzymes in Pseudomonas putida Lysine Metabolism". mBio May 2019, 10 (3) e02577-18; DOI: 10.1128/mBio.02577-18

161. Wu, Li, Ye, Zhao, Fan, Li, Bhang, Bi, and Zhang. (2019) "Engineering an Artificial Membrane Vesicle Trafficking System (AMVTS) for the Excretion of β-Carotene in Escherichia coli". ACS Synth. Biol., DOI: 10.1021/acssynbio.8b00472

160. Jorge Gonzalez de la Cruz, Fabian Machens, Katrin Messerschmidt, and Arren Bar-Even. (2019) "Core catalysis of the reductive glycine pathway demonstrated in yeast". ACS Synth. Biol., DOI: 10.1021/acssynbio.8b00464

159. Tao Wu, Siwei Li, Lijun Ye, Dongdong Zhao, Feiyu Fan, Qinyan Li, Bolin Zhang, Changhao Bi, and Xueli Zhang. (2019) "Engineering an artificial membrane vesicle trafficking system (AMVTS) for the excretion of β-carotene in Escherichia coli". ACS Synth. Biol., DOI: 10.1021/acssynbio.8b00472

158. Naveen Venayak, Kaushik Raj, Radhakrishnan Mahadevan. (2019) "Impact framework: A python framework for writing data analysis workflows to interpretmicrobial physiology". Metabolic Engineering Communications https://doi.org/10.1016/j.mec.2019.e00089

157. Zaiqiang Wu, Junsong Wang, Xueli Zhang, Changhao Bi. (2019) "Engineering an electroactive Escherichia coli for the microbial electrosynthesis of succinate by increasing the intracellular FAD pool". Biochemical Engineering Journal. https://doi.org/10.1016/j.bej.2019.03.015

156. Li Z, Xiong B, Liu L, Li S, Xin X, Li Z, Zhang X, Bi C. (2019) "Development of an autotrophic fermentation technique for the production of fatty acids using an engineered Ralstonia eutropha cell factory". J Ind Microbiol Biotechnol. doi: 10.1007/s10295-019-02156-8

155. David I. Walsh, III, Marilene Pavan, Luis Ortiz, Scott Wick, Johanna Bobrow, Nicholas J. Guido, Sarah Leinicke, Dany Fu, Shreya Pandit, Lucy Qin, Peter A. Carr, Douglas Densmore. (2019) "Standardizing Automated DNA Assembly: Best Practices, Metrics, and Protocols Using Robots" SLAS Technology. https://doi.org/10.1177/2472630318825335

154. Zaiqiang Wu, Junsong Wang, Jun Liu, Yan Wang, Changhao Bi and Xueli Zhang. (2019) "Engineering an electroactive Escherichia coli for the microbial electrosynthesis of succinate from glucose and CO2". Microbial Cell Factories 18:15 https://doi.org/10.1186/s12934-019-1067-3

153. Anuj Dwivedi, Kamal Kumar, and Praveen Kumar Verma. (2019) "Chapter 4 - Constructing Synthetic Pathways in Plants: Strategies and Tools" in Current Developments in Biotechnology and Bioengineering Synthetic Biology (Cell Engineering and Bioprocessing Technologies), Pages 77-113 https://doi.org/10.1016/B978-0-444-64085-7.00004-6

152. R. Clay Wright, Jennifer Nemhauser. (2019) "Plant Synthetic Biology: Quantifying the Known Unknowns and Discovering the Unknown Unknowns". Plant Physiology. DOI: https://doi.org/10.1104/pp.18.01222

151. David G. J. Mann, Scott A. Bevan, Anthony J. Harvey, Rachelle A. Leffert-Sorenson. (2018) "The Use of an Automated Platform to Assemble Multigenic Constructs for Plant Transformation" Transgenic Plants pp 19-35

150. Garima Goyal, Zak Costello, Jorge Alonso Guitierrez, Aram Kang, Taek Soon Lee, Hector Garcia Martin, and Nathan J Hillson. (2018) "Parallel Integration and Chromosomal Expansion of Metabolic Pathways" ACS Synthetic Biology DOI: 10.1021/acssynbio.8b00243

149. Lijun Ye, Xinna Zhu, Tao Wu, Wen Wang, Dongdong Zhao, Changhao Bi and Xueli Zhang. (2018) "Optimizing the localization of astaxanthin enzymes for improved productivity". Biotechnology for Biofuels201811:278 https://doi.org/10.1186/s13068-018-1270-1

148. Victor Chubukov, Florence Mingardon, Wendy Schackwitz, Edward E. K. Baidoo, Jorge Alonso-Gutierrez, Qijun Hu, Taek Soon Lee, Jay D. Keasling, Aindrila Mukhopadhyay. (2015) "Acute Limonene Toxicity in Escherichia coli Is Caused by Limonene Hydroperoxide and Alleviated by a Point Mutation in Alkyl Hydroperoxidase AhpC". Appl. Environ. Microbiol. 81 (14) 4690-4696; DOI: 10.1128/AEM.01102-15

147. Thomas L. Ruegg, Jose H. Pereira, Joseph C. Chen, Andy DeGiovanni, Pavel Novichkov, Vivek K. Mutalik, Giovani P. Tomaleri, Steven W. Singer, Nathan J. Hillson, Blake A. Simmons, Paul D. Adams & Michael P. Thelen. (2018) "Jungle Express is a versatile repressor system for tight transcriptional control". Nature Communications 9, 3617. https://doi.org/10.1038/s41467-018-05857-3

146. Thomas H. Mann and Lucy Shapiro. (2018) "Integration of cell cycle signals by multi-PAS domain kinases". PNAS 201808543 https://doi.org/10.1073/pnas.1808543115

145. Xu Feng, Dongdong Zhao, Xueli Zhang, Xiang Ding, and Changhao Bi. (2018) "CRISPR/Cas9 Assisted Multiplex Genome Editing Technique in Escherichia coli". Biotechnology Journal https://doi.org/10.1002/biot.201700604

144. Bin Xiong, Zhongkang Li, Li Liu, Dongdong Zhao, Xueli Zhang and Changhao Bi. (2018) "Genome editing of Ralstonia eutropha using an electroporation-based CRISPR-Cas9 technique" Biotechnology for Biofuels 11:172 https://doi.org/10.1186/s13068-018-1170-4

143. Guo JY, Hu KL, Bi CH, Li QY, Zhang XL. (2018) "Construction of an alternative glycerol-utilization pathway for improved β-carotene production in Escherichia coli". J Ind Microbiol Biotechnol. doi: 10.1007/s10295-018-2045-1.

142. Erik K.R. Hanko, Charles M. Denby, Violeta Sànchez i Nogué, Weiyin Lin, Kelsey J. Ramirez, Christine A. Singer, Gregg T. Beckham, Jay D. Keasling.(2018) "Engineering β-oxidation in Yarrowia lipolytica for methyl ketone production". Metabolic Engineering https://doi.org/10.1016/j.ymben.2018.05.018

141. Wu, T., Ye, L., Zhao, D. et al. (2018) "Engineering membrane morphology and manipulating synthesis for increased lycopene accumulation in Escherichia coli cell factories" 3 Biotech 8: 269. https://doi.org/10.1007/s13205-018-1298-8

140. Jimmy Mevaere, Christophe Goulard, Olha Schneider, Olga N. Sekurova, Haiyan Ma, Séverine Zirah, Carlos Afonso, Sylvie Rebuffat, Sergey B. Zotchev & Yanyan Li. (2018) "An orthogonal system for heterologous expression of actinobacterial lasso peptides in Streptomyces hosts". Scientific Reports doi:10.1038/s41598-018-26620-0

139. Guo JY, Hu KL, Bi CH, Li QY, Zhang XL. (2018) "Construction of an alternative glycerol-utilization pathway for improved β-carotene production in Escherichia
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138. Dawn T. Eriksen, Ran Chao, Huimin Zhao. (2018) "Applying Advanced DNA Assembly Methods to Generate Pathway Libraries", in Synthetic Biology: Parts, Devices and Applications, 1. https://doi.org/10.1002/9783527688104.ch16

137. Arturo Casini, Fang-Yuan Chang, Raissa Eluere, Andrew M. King, Eric M. Young, Quentin M. Dudley, Ashty Karim, Katelin Pratt, Cassandra Bristol, Anthony Forget, Amar Ghodasara, Robert Warden-Rothman, Rui Gan, Alexander Cristofaro, Amin Espah Borujeni, Min-Hyung Ryu, Jian Li, Yong-Chan Kwon, He Wang, Evangelos Tatsis, Carlos Rodriguez-Lopez, Sarah O’Connor, Marnix H. Mdema, Michael A. Fischbach, Michael C. Jewett, Christopher Voigt, and D. Benjamin Gordon. (2018) "A Pressure Test to Make 10 Molecules in 90 Days: External Evaluation of Methods to Engineer Biology". Journal of the American Chemical Society Article ASAP DOI: 10.1021/jacs.7b13292

136. Coates, R.C., Bowen, B.P., Oberortner, E. et al. (2018) "An integrated workflow for phenazine-modifying enzyme characterization". J Ind Microbiol Biotechnol. https://doi.org/10.1007/s10295-018-2025-5

135. Ellis Whitehead, Fabian Rudolf, Hans-Michael Kaltenbach, and Jörg Stelling. (2018) "Automated Planning Enables Complex Protocols on Liquid-Handling Robots". ACS Synth. Biol., Article ASAP DOI: 10.1021/acssynbio.8b00021

134. Charles M. Denby, Rachel A. Li, Van T. Vu, Zak Costello, Weiyin Lin, Leanne Jade G. Chan, Joseph Williams, Bryan Donaldson, Charles W. Bamforth, Christopher J. Petzold, Henrik V. Scheller, Hector Garcia Martin & Jay D. Keasling. (2018) "Industrial brewing yeast engineered for the production of primary flavor determinants in hopped beer". Nature Communications volume 9, Article number: 965. doi:10.1038/s41467-018-03293-x

133. Esteban Marcellin and Lars Keld Nielsen. (2018) "Advances in analytical tools for high throughput strain engineering". Current Opinion in Biotechnology, Volume 54, Pages 33–40. https://doi.org/10.1016/j.copbio.2018.01.027

132. Mitchell G. Thompson, Nima Sedaghatian, Jesus F. Barajas, Maren Wehrs, Constance B. Bailey, Nurgul Kaplan, Nathan J. Hillson, Aindrila Mukhopadhyay & Jay D. Keasling. (2018) "Isolation and characterization of novel mutations in the pSC101 origin that increase copy number". Scientific Reports 8, 1590 doi:10.1038/s41598-018-20016-w

131. Dossani ZY, Reider Apel A, Szmidt-Middleton H, Hillson NJ, Deutsch S, Keasling JD, and Mukhopadhyay A. (2017). A combinatorial approach to synthetic transcription factor-promoter combinations for yeast strain engineering. Yeast 1–8. doi:10.1002/yea.3292

130. Dongdong Zhao, Xu Feng, Xinna Zhu, Tao Wu, Xueli Zhang & Changhao Bi. (2017) "CRISPR/Cas9-assisted gRNA-free one-step genome editing with no sequence limitations and improved targeting efficiency". Scientific Reports 7, Article number: 16624 doi:10.1038/s41598-017-16998-8

129. Heather M. Jensen, Thomas Eng, Victor Chubukov, Robin A. Herbert & Aindrila Mukhopadhyay. (2017) Improving membrane protein expression and function using genomic edits. Scientific Reports 7, Article number: 13030 doi:10.1038/s41598-017-12901-7

128. David S. Ojala, Sabrina Sun, Jorge L. Santiago-Ortiz, Mikhail G. Shapiro, Philip A. Romero, David V. Schaffer. (2017)In Vivo Selection of a Computationally Designed SCHEMA AAV Library Yields a Novel Variant for Infection of Adult Neural Stem Cells in the SVZ. Molecular Therapy https://doi.org/10.1016/j.ymthe.2017.09.006

127. R. Clay Wright, Mollye L. Zahler, Stacey R. Gerben and Jennifer L. Nemhauser. (2017) Insights into the Evolution and Function of Auxin Signaling F-Box Proteins in Arabidopsis thaliana Through Synthetic Analysis of Natural Variants. Genetics October 1, 2017 vol. 207 no. 2 583-591; https://doi.org/10.1534/genetics.117.300092

126. Swapnil P. Bhatia, Michael J. Smanski, Christopher A. Voigt, and Douglas M. Densmore. (2017) Genetic Design via Combinatorial Constraint Specification. ACS Synth. Biol., DOI: 10.1021/acssynbio.7b00154

125. de Rond, Stow, Eigl, Johnson, Chan, Goyal, Baidoo, Hillson, Petzold, Sarpong, and Keasling. (2017) Oxidative cyclization of prodigiosin by an alkylglycerol monooxygenase-like enzyme.
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124. Gach PC*, Iwai K,  Kim P,  Hillson NJ, and  Singh AK*. (2017) Droplet Microfluidics for  Synthetic Biology. Lab on a Chip. DOI: 10.1039/C7LC00576H

123. Xinna Zhu, Dongdong Zhao, Huanna Qiu, Feiyu Fan Shuli Man, Changhao Bi, Xueli Zhang. (2017) The CRISPR/Cas9-facilitated multiplex pathway optimization (CFPO) technique and its application to improve the Escherichia coli xylose utilization pathway. Metabolic Engineering https://doi.org/10.1016/j.ymben.2017.08.003

122. Matthias Christen, Luca Del Medico, Heinz Christen, Beat Christen. (2017) Genome Partitioner: A web tool for multi-level partitioning of large-scale DNA constructs for synthetic biology applications. PLOS ONE. DOI: https://doi.org/10.1371/journal.pone.0177234

121. Björn D. Heijstra, Ching Leang, and Alex Juminaga. (2017) Gas fermentation: cellular engineering possibilities and scale up. Microb Cell Fact. 2017; 16: 60. doi:  10.1186/s12934-017-0676-y
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120. Appleton E, Madsen C, Roehner N, Densmore D. (2017) Design Automation in Synthetic Biology. Cold Spring Harb Perspect Biol. doi: 10.1101/cshperspect.a023978. [Epub ahead of print] PubMed PMID: 28246188.

119. Amit Ghosh, David Ando, Jennifer Gin, Weerawat Runguphan, Charles Denby, George Wang, Edward E. K. Baidoo, Chris Shymansky, Jay D. Keasling, and Héctor García Martín. (2016) 13C Metabolic Flux Analysis for Systematic Metabolic Engineering of S. cerevisiae for Overproduction of Fatty Acids.  Front. Bioeng. Biotechnol. https://doi.org/10.3389/fbioe.2016.00076

118. William Henry Bothfeld, Grace Kapov, and Keith Tyo. (2017) A glucose-sensing toggle switch for autonomous, high productivity genetic control. ACS Synth. Biol. DOI: 10.1021/acssynbio.6b00257

117. Neta Agmon, Zuojian Tang, Kun Yang, Ben Sutter, Shigehito Ikushima, Yizhi Cai, Katrina Caravelli, James A. Martin, Xiaoji Sun, Woo Jin Choi, Allen Zhang, Giovanni Stracquadanio, Haiping Hao, Benjamin P. Tu, David Fenyo, Joel S. Bader, and Jef D. Boeke. (2017) Low escape-rate genome safeguards with minimal molecular perturbation of Saccharomyces cerevisiae
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116. Lena Hochrein, Fabian Machens, Juergen Gremmels, Karina Schulz, Katrin Messerschmidt, Bernd Mueller-Roeber. (2017) AssemblX: a user-friendly toolkit for rapid and reliable multi-gene assemblies. Nucl Acids Res gkx034. DOI:https://doi.org/10.1093/nar/gkx034

115. Marta Vazquez-Vilar, Alfredo Quijano-Rubio, Asun Fernandez-del-Carmen, Alejandro Sarrion-Perdigones, Rocio Ochoa-Fernandez, Peio Ziarsolo, José Blanca, Antonio Granell and Diego Orzaez. (2016) GB3.0: a platform for plant bio-design that connects functional DNA elements with associated biological data. Nucl. Acids Res. doi: 10.1093/nar/gkw1326

114. Victor Chubukov, John James Desmarais, George Wang, Leanne Jade G Chan, Edward EK Baidoo, Christopher J Petzold, Jay D Keasling & Aindrila Mukhopadhyay. (2017) Engineering glucose metabolism of Escherichia coli under nitrogen starvation. npj Systems Biology and Applications 3, Article number: 16035 doi:10.1038/npjsba.2016.35

113. Lauren B. A. Woodruff, Thomas E. Gorochowski, Nicholas Roehner, Tarjei S. Mikkelsen, Douglas Densmore, D. Benjamin Gordon, Robert Nicol and Christopher A. Voigt. (2016) Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration. Nucl. Acids Res. (2016) doi: 10.1093/nar/gkw1226

112. Ernst Oberortner, Jan-Fang Cheng, Nathan J. Hillson, and Samuel Deutsch. (2016) Streamlining the Design-to-Build Transition with Build-Optimization Software Tools. ACS Synth. Biol., Article ASAP
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111. Zhao, Yuan, Xiong, Sun, Ye, Li, Zhang, Bi. (2016) Development of a fast and easy method for Escherichia coli genome editing with CRISPR/Cas9.
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110. Hans J Genee, Anne P Bali, Søren D Petersen, Solvej Siedler, Mads T Bonde, Luisa S Gronenberg, Mette Kristensen, Scott J Harrison, and Morten O A Sommer. (2016) Functional mining of transporters using synthetic selections. Nature Chemical Biology doi:10.1038/nchembio.2189

109. Garcia-Ruiz, E., HamediRad, M., and Zhao, H. (2016) Pathway Design, Engineering, and Optimization, pp 1-40, Springer Berlin Heidelberg, Berlin, Heidelberg. DOI 10.1007/10_2016_12

108. Shi, Z., Vickers, C.E. (2016) Molecular Cloning Designer Simulator (MCDS): All-in-one molecular cloning and genetic engineering design, simulation and management software for complex synthetic biology and metabolic engineering projects. Metabolic Engineering Open volume 3, pp. 173 - 186. DOI:dx.doi.org/10.1016/j.meteno.2016.05.003

107. Hongnian Sun, Dongdong Zhao, Bin Xiong, Chunzhi Zhang, Changhao Bi. (2016) Engineering Corynebacterium glutamicum for violacein hyper production. Microbial Cell Factories 2016 15:148. DOI: 10.1186/s12934-016-0545-0

106.  Brian Chaikind, Jeffrey L. Bessen, David B. Thompson, Johnny H. Hu and David R. Liu. (2016) A programmable Cas9-serine recombinase fusion protein that operates on DNA sequences in mammalian cells.  Nucl. Acids Res. doi: 10.1093/nar/gkw707

105. Trinh, C.T., Mendoza, B., 2016. Modular Cell Design for Rapid, Efficient Strain Engineering  towards Industrialization of Biology, Curr Opin Chem Eng, 14:18–25

104. Olga N. Sekurova, Jianhai Zhang, Kåre A. Kristiansen and Sergey B. Zotchev. (2016) Activation of chloramphenicol biosynthesis in Streptomyces venezuelae ATCC 10712 by ethanol shock: insights from the promoter fusion studies. Microbial Cell Factories 2016 15:85. DOI: 10.1186/s12934-016-0484-9

103. Pablo Carbonell, Andrew Currin, Adrian J. Jervis, Nicholas J. W. Rattray, Neil Swainston, Cunyu Yan, Eriko Takano, and Rainer Breitling. (2016) Bioinformatics for the synthetic biology of natural products: integrating across the Design–Build–Test cycle. Nat. Prod. Rep., 2016, Advance Article. DOI: 10.1039/C6NP00018E

102. Marijke Frederix, Florence Mingardon, Matthew Hu, Ning Sun, Todd Pray, Seema Singh, Blake A. Simmons, Jay D. Keasling and Aindrila Mukhopadhyay. (2015) Development of an E. coli strain for one-pot biofuel production from ionic liquid pretreated cellulose and switchgrass. Green Chem., 2016, Advance Article. DOI: 10.1039/C6GC00642F

101. Thomas H. Mann, W. Seth Childers, Jimmy A. Blair, Michael R. Eckart, and Lucy Shapiro. (2016) A cell cycle kinase with tandem sensory PAS domains integrates cell fate cues. Nature Communications 7 (11454). doi:10.1038/ncomms11454

100. Sadowski, Michael I.; Grant, Chris; Fell, Tim S. (2016) Harnessing QbD, Programming Languages, and Automation for Reproducible Biology. TRENDS IN BIOTECHNOLOGY 34 (3), 214-227.

99. Beck, D. A. C., Carothers, J. M., Subramanian, V. R. and Pfaendtner, J. (2016), Data science: Accelerating innovation and discovery in chemical engineering. AIChE J., 62: 1402–1416. doi:10.1002/aic.15192

98. Javidpour P, Deutsch S, Mutalik VK, Hillson NJ, Petzold CJ, Keasling JD, et al. (2016) Investigation of Proposed Ladderane Biosynthetic Genes from Anammox Bacteria by Heterologous Expression in E. coli. PLoS ONE 11(3): e0151087. doi:10.1371/journal.pone.0151087

97. Sarah Rodriguez, Charles M. Denby, T. Van Vu, Edward E. K. Baidoo, George Wang and Jay D. Keasling. (2016) ATP citrate lyase mediated cytosolic acetyl-CoA biosynthesis increases mevalonate production in Saccharomyces cerevisiae. Microbial Cell Factories 201615:48 DOI: 10.1186/s12934-016-0447-1

96. Sekar K, Gentile AM, Bostick JW, Tyo KEJ (2016) N-Terminal-Based Targeted, Inducible Protein Degradation in Escherichia coli. PLoS ONE 11(2): e0149746. doi:10.1371/journal.pone.0149746

95. Miguel Suástegui, Meirong Gao, Zengyi Shao. (2016) Chapter 6 – Pathway Assembly and Optimization. Biotechnology for Biofuel Production and Optimization, Pages 139–164. doi:10.1016/B978-0-444-63475-7.00006-6

94. Justin Hsia, William J. Holtz, Michel M. Maharbiz, Murat Arcak,Jay D. Keasling. (2016) Modular Synthetic Inverters from Zinc Finger Proteins and Small RNAs. PLOS ONE DOI: 10.1371/journal.pone.0149483

93. Linshiz, Jensen, Stawski, Bi, Elsbree, Jiao, Kim, Mathies, Keasling, Hillson. (2016) End-to-end automated microfluidic platform for synthetic biology: from design to functional analysis. Journal of Biological Engineering 10

92. Henrique Cestari De Paoli, Gerald A. Tuskan & Xiaohan Yang. (2016) An innovative platform for quick and flexible joining of assorted DNA fragments. Scientific Reports 6, Article number: 19278 doi:10.1038/srep19278

91. G.H. McArthur IV, P.P. Nanjannavar, E.H. Miller, S.S. Fong. Integrative metabolic engineering. AIMS Bioengineering, 2015, 2(3): 93-103. doi: 10.3934/bioeng.2015.3.93

90. Kun Yang, Giovanni Stracquadanio, Jingchuan Luo, Jef D. Boeke, Joel S. Bader. (2015) BioPartsBuilder: a synthetic biology tool for combinatorial assembly of biological parts. Bioinformatics:btv664

89. Douglas Densmore, Soha Hassoun (2012). Design Automation for Synthetic Biological Systems. IEEE Design & Test of Computers 29:7-20

88. A. Casini, J. T. MacDonald, J. D. Jonghe, G. Christodoulou, P. S. Freemont, G. S. Baldwin, T. Ellis. (2014) One-pot DNA construction for synthetic biology: the Modular Overlap-Directed Assembly with Linkers (MODAL) strategy. Nucleic Acids Research 42:e7-e7.

87. Michal Galdzicki, Kevin P Clancy, Ernst Oberortner, Matthew Pocock, Jacqueline Y Quinn, Cesar A Rodriguez, Nicholas Roehner, Mandy L Wilson, Laura Adam, J Christopher Anderson, Bryan A Bartley, Jacob Beal, Deepak Chandran, Joanna Chen, Douglas Densmore, Drew Endy, Raik Grünberg, Jennifer Hallinan, Nathan J Hillson, Jeffrey D Johnson, Allan Kuchinsky, Matthew Lux, Goksel Misirli, Jean Peccoud, Hector A Plahar, Evren Sirin, Guy-Bart Stan, Alan Villalobos, Anil Wipat, John H Gennari, Chris J Myers, Herbert M Sauro. (2014). The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology. Nature Biotechnology 32:545-550.

86. Richard Kelwick, James T. MacDonald, Alexander J. Webb, Paul Freemont. (2014) Developments in the Tools and Methodologies of Synthetic Biology
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85. Chris J. Myers. (2013) Platforms for Genetic Design Automation. Methods in Microbiology Volume 40, 2013, Pages 177–202.

84. Ran Chao, Yongbo Yuan, Huimin Zhao. (2014) Recent advances in DNA assembly technologies. FEMS Yeast Res. 2014 Jun 5. doi: 10.1111/1567-1364.12171.

83. Hagen A, Poust S, de Rond T, Fortman JL, Katz L, Petzold CJ, Keasling JD. (2015) Engineering a polyketide synthase for in vitro production of adipic acid. ACS Synth Biol. DOI: 10.1021/acssynbio.5b00153

82. Bertram M. Berla, Rajib Saha, Costas D. Maranas & Himadri B. Pakrasi. (2015). Cyanobacterial Alkanes Modulate Photosynthetic Cyclic Electron Flow to Assist Growth under Cold Stress. Scientific Reports 5, Article number: 14894 doi:10.1038/srep14894

81. Beal J, Adler A, Yaman F. Managing Bioengineering Complexity with AI Techniques. Biosystems. 2015 Sep 3. pii: S0303-2647(15)00129-X. doi: 10.1016/j.biosystems.2015.08.006

80. Steven C. Slater, Blake A. Simmons, Tamara S. Rogers, Margaret F. Phillips, Kristy Nordahl, Brian H. Davison. (2015) The DOE Bioenergy Research Centers: History, Operations, and Scientific Output. Bioenerg. Res. DOI 10.1007/s12155-015-9660-8.

79. Kelly A. Markham and Hal S. Alper. (2015) Synthetic Biology for Specialty Chemicals. Annual Review of Chemical and Biomolecular Engineering
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78. Poust S, Piety J, Bar-Even A, Louw C, Baker D, Keasling JD, Siegel JB. (2015) Mechanistic Analysis of an Engineered Enzyme that Catalyzes the Formose Reaction.. Chembiochem. doi: 10.1002/cbic.201500228

77. Thomas Vogl, Mudassar Ahmad, Florian W Krainer, Helmut Schwab, Anton Glieder. (2015) Restriction site free cloning (RSFC) plasmid family for seamless, sequence independent cloning in Pichia pastoris. Microbial Cell Factories 14:103  doi:10.1186/s12934-015-0293-6.

76. George H McArthur IV, Pooja P Nanjannavar, Emily H Miller, and Stephen S Fong. (2015) Integrative metabolic engineering. Biengineering Volume 2, Issue 3, 93-103.
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75. Matthias Christen, Samuel Deutsch, and Beat Christen. (2015) Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis ACS Synth. Biol., Article ASAP DOI: 10.1021/acssynbio.5b00087

74. Arturo Casini, Marko Storch, Geoffrey S. Baldwin, & Tom Ellis. (2015) Bricks and blueprints: methods and standards for DNA assembly. Nature Reviews Molecular Cell Biology doi:10.1038/nrm4014

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