In depth guide
Comma separated value (.csv); FASTA (.fas) and Genbank (.gb) sequence files
jbei-seq format (.xml) sequence files
SBOL XML format (.xml) sequence files
j5 input files
j5 parameters file
Sequences list file and zipped sequences file
Parts list file
Target part order list file
Eugene rules list file
Master plasmids list file
Master oligos list file
Master direct syntheses list file
Assembly files to condense list file and zipped assembly files file
Downstream automation parameters file
Multi-well plate file
Source plate list file and zipped source plate files file
j5 output
Assembly files
Combinatorial SLIC/Gibson/CPEC/SLiCE
Mock Assembly
Combinatorial Mock Assembly
Golden Gate
Combinatorial Golden Gate
Condensed multiple j5 assembly files
Downstream automation
Distribute PCR reactions file
PR-PR distribute (split and pool) PCR reactions configuration (.pr) files
Interfaces for using j5
Integration with the JBEI Registry/Vector Editor/DeviceEditor and Clotho BioCAD platforms
XML-RPC web services provider
Simplified j5 web interface
Simplified j5 SBOL XML <-> GenBank conversion utility web interface
Stand alone command line interface
Error messages
List of j5 error messages